Dashboard
Column
Screened (Target): 1355 (1500)
Enrolled (Target): 526 (609)
Average screened per month
137Average enrolled per month
46Column
Study Flow & Monthly Cascade (Cumulative Numbers), Updated on 2023-05-23
Daily trend of screening and enrollment
Monthly trend of screening and enrollment
Column
Follow-up status at enroll and follow-up visits (Cumulative Numbers)
Follow-up status by number of visits (Head count)
% of number of visits at each follow-up month
Study Data
Column
Characteristics
| HPV Result | ||
|---|---|---|---|
Characteristic | Total N = 13071 | Positive 540 (41.3)1 | Negative 767 (58.7)1 |
Study Strata | |||
FSW <30 HIV- | 469 (40.9) | 207 (43.7) | 262 (38.9) |
FSW <30 HIV+ | 34 (3.0) | 18 (3.8) | 16 (2.4) |
FSW 30+ HIV- | 489 (42.6) | 172 (36.3) | 317 (47.1) |
FSW 30+ HIV+ | 114 (9.9) | 59 (12.4) | 55 (8.2) |
MSM <30 HIV- | 26 (2.3) | 7 (1.5) | 19 (2.8) |
MSM <30 HIV+ | 8 (0.7) | 8 (1.7) | 0 (0.0) |
MSM 30+ HIV- | 4 (0.3) | 0 (0.0) | 4 (0.6) |
MSM 30+ HIV+ | 3 (0.3) | 3 (0.6) | 0 (0.0) |
Missing | 160 | 66 | 94 |
Age category | |||
<30 | 547 (47.2) | 247 (51.4) | 300 (44.2) |
30+ | 613 (52.8) | 234 (48.6) | 379 (55.8) |
Missing | 147 | 59 | 88 |
Gender Category | |||
FSW | 1,252 (96.0) | 515 (95.7) | 737 (96.2) |
MSM | 49 (3.8) | 21 (3.9) | 28 (3.7) |
Other | 1 (0.1) | 0 (0.0) | 1 (0.1) |
Prefer Not To Say | 2 (0.2) | 2 (0.4) | 0 (0.0) |
Missing | 3 | 2 | 1 |
HIV Status | |||
Negative | 1,121 (86.3) | 437 (81.4) | 684 (89.8) |
Positive | 178 (13.7) | 100 (18.6) | 78 (10.2) |
Missing | 8 | 3 | 5 |
1n (%) | |||
GeneXpert Results
Column
LTFU by months & visits
Missing AGE
Missing SEX
# A tibble: 3 × 2
pid sex
<chr> <chr>
1 TSH0708 <NA>
2 TSH0713 <NA>
3 TSH0762 <NA> Missing HIV Status
R Session Info
R version 4.3.0 (2023-04-21 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 22621)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8
[2] LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
time zone: America/Winnipeg
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flexdashboard_0.6.1 glue_1.6.2 sjlabelled_1.2.0
[4] gtsummary_1.7.1 lubridate_1.9.2 forcats_1.0.0
[7] stringr_1.5.0 dplyr_1.1.2 purrr_1.0.1
[10] readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
[13] ggplot2_3.4.2 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] tidyselect_1.2.0 viridisLite_0.4.2 farver_2.1.1
[4] fastmap_1.1.1 lazyeval_0.2.2 fontquiver_0.2.1
[7] janitor_2.2.0 promises_1.2.0.1 broom.helpers_1.13.0
[10] digest_0.6.31 mime_0.12 timechange_0.2.0
[13] lifecycle_1.0.3 ellipsis_0.3.2 gfonts_0.2.0
[16] magrittr_2.0.3 compiler_4.3.0 rlang_1.1.1
[19] sass_0.4.6 tools_4.3.0 utf8_1.2.3
[22] yaml_2.3.7 gt_0.9.0 data.table_1.14.8
[25] knitr_1.42 askpass_1.1 labeling_0.4.2
[28] htmlwidgets_1.6.2 curl_5.0.0 here_1.0.1
[31] xml2_1.3.4 httpcode_0.3.0 foreign_0.8-84
[34] withr_2.5.0 grid_4.3.0 fansi_1.0.4
[37] gdtools_0.3.3 xtable_1.8-4 colorspace_2.1-0
[40] ggprism_1.0.4 scales_1.2.1 crul_1.4.0
[43] insight_0.19.1 cli_3.6.1 rmarkdown_2.21
[46] crayon_1.5.2 ragg_1.2.5 generics_0.1.3
[49] rstudioapi_0.14 httr_1.4.6 tzdb_0.4.0
[52] readxl_1.4.2 cachem_1.0.8 cellranger_1.1.0
[55] vctrs_0.6.2 jsonlite_1.8.4 fontBitstreamVera_0.1.1
[58] hms_1.1.3 systemfonts_1.0.4 crosstalk_1.2.0
[61] plotly_4.10.1 fontawesome_0.5.1 jquerylib_0.1.4
[64] rio_0.5.29 DT_0.28 stringi_1.7.12
[67] flextable_0.9.1 gtable_0.3.3 later_1.3.1
[70] munsell_0.5.0 pillar_1.9.0 htmltools_0.5.5
[73] openssl_2.0.6 R6_2.5.1 textshaping_0.3.6
[76] rprojroot_2.0.3 evaluate_0.21 shiny_1.7.4
[79] haven_2.5.2 highr_0.10 openxlsx_4.2.5.2
[82] snakecase_0.11.0 fontLiberation_0.1.0 httpuv_1.6.11
[85] bslib_0.4.2 zip_2.3.0 uuid_1.1-0
[88] Rcpp_1.0.10 officer_0.6.2 xfun_0.39
[91] pkgconfig_2.0.3 package * version date (UTC) lib source
askpass 1.1 2019-01-13 [1] CRAN (R 4.3.0)
broom.helpers 1.13.0 2023-03-28 [1] CRAN (R 4.3.0)
bslib 0.4.2 2022-12-16 [1] CRAN (R 4.3.0)
cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.0)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.3.0)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.0)
crosstalk 1.2.0 2021-11-04 [1] CRAN (R 4.3.0)
crul 1.4.0 2023-05-17 [1] CRAN (R 4.3.0)
curl 5.0.0 2023-01-12 [1] CRAN (R 4.3.0)
data.table 1.14.8 2023-02-17 [1] CRAN (R 4.3.0)
digest 0.6.31 2022-12-11 [1] CRAN (R 4.3.0)
dplyr * 1.1.2 2023-04-20 [1] CRAN (R 4.3.0)
DT 0.28 2023-05-18 [1] CRAN (R 4.3.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.0)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
fansi 1.0.4 2023-01-22 [1] CRAN (R 4.3.0)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.3.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
flexdashboard * 0.6.1 2023-01-23 [1] CRAN (R 4.3.0)
flextable 0.9.1 2023-04-02 [1] CRAN (R 4.3.0)
fontawesome 0.5.1 2023-04-18 [1] CRAN (R 4.3.0)
fontBitstreamVera 0.1.1 2017-02-01 [1] CRAN (R 4.3.0)
fontLiberation 0.1.0 2016-10-15 [1] CRAN (R 4.3.0)
fontquiver 0.2.1 2017-02-01 [1] CRAN (R 4.3.0)
forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.3.0)
foreign 0.8-84 2022-12-06 [2] CRAN (R 4.3.0)
gdtools 0.3.3 2023-03-27 [1] CRAN (R 4.3.0)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.0)
gfonts 0.2.0 2023-01-08 [1] CRAN (R 4.3.0)
ggplot2 * 3.4.2 2023-04-03 [1] CRAN (R 4.3.0)
ggprism 1.0.4 2022-11-04 [1] CRAN (R 4.3.0)
glue * 1.6.2 2022-02-24 [1] CRAN (R 4.3.0)
gt 0.9.0 2023-03-31 [1] CRAN (R 4.3.0)
gtable 0.3.3 2023-03-21 [1] CRAN (R 4.3.0)
gtsummary * 1.7.1 2023-04-27 [1] CRAN (R 4.3.0)
haven 2.5.2 2023-02-28 [1] CRAN (R 4.3.0)
here 1.0.1 2020-12-13 [1] CRAN (R 4.3.0)
highr 0.10 2022-12-22 [1] CRAN (R 4.3.0)
hms 1.1.3 2023-03-21 [1] CRAN (R 4.3.0)
htmltools 0.5.5 2023-03-23 [1] CRAN (R 4.3.0)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.0)
httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.3.0)
httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.0)
httr 1.4.6 2023-05-08 [1] CRAN (R 4.3.0)
insight 0.19.1 2023-03-18 [1] CRAN (R 4.3.0)
janitor 2.2.0 2023-02-02 [1] CRAN (R 4.3.0)
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.3.0)
jsonlite 1.8.4 2022-12-06 [1] CRAN (R 4.3.0)
knitr 1.42 2023-01-25 [1] CRAN (R 4.3.0)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.3.0)
later 1.3.1 2023-05-02 [1] CRAN (R 4.3.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.3.0)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.0)
lubridate * 1.9.2 2023-02-10 [1] CRAN (R 4.3.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.3.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.0)
officer 0.6.2 2023-03-28 [1] CRAN (R 4.3.0)
openssl 2.0.6 2023-03-09 [1] CRAN (R 4.3.0)
openxlsx 4.2.5.2 2023-02-06 [1] CRAN (R 4.3.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.0)
plotly 4.10.1 2022-11-07 [1] CRAN (R 4.3.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
purrr * 1.0.1 2023-01-10 [1] CRAN (R 4.3.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.0)
ragg 1.2.5 2023-01-12 [1] CRAN (R 4.3.0)
Rcpp 1.0.10 2023-01-22 [1] CRAN (R 4.3.0)
readr * 2.1.4 2023-02-10 [1] CRAN (R 4.3.0)
readxl 1.4.2 2023-02-09 [1] CRAN (R 4.3.0)
rio 0.5.29 2021-11-22 [1] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
rmarkdown 2.21 2023-03-26 [1] CRAN (R 4.3.0)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.3.0)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.3.0)
sass 0.4.6 2023-05-03 [1] CRAN (R 4.3.0)
scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
shiny 1.7.4 2022-12-15 [1] CRAN (R 4.3.0)
sjlabelled * 1.2.0 2022-04-10 [1] CRAN (R 4.3.0)
snakecase 0.11.0 2019-05-25 [1] CRAN (R 4.3.0)
stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.0)
stringr * 1.5.0 2022-12-02 [1] CRAN (R 4.3.0)
systemfonts 1.0.4 2022-02-11 [1] CRAN (R 4.3.0)
textshaping 0.3.6 2021-10-13 [1] CRAN (R 4.3.0)
tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.3.0)
tidyr * 1.3.0 2023-01-24 [1] CRAN (R 4.3.0)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.0)
tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.3.0)
timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.0)
tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.3.0)
utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.0)
uuid 1.1-0 2022-04-19 [1] CRAN (R 4.3.0)
vctrs 0.6.2 2023-04-19 [1] CRAN (R 4.3.0)
viridisLite 0.4.2 2023-05-02 [1] CRAN (R 4.3.0)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.3.0)
xfun 0.39 2023-04-20 [1] CRAN (R 4.3.0)
xml2 1.3.4 2023-04-27 [1] CRAN (R 4.3.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)
zip 2.3.0 2023-04-17 [1] CRAN (R 4.3.0)
[1] C:/Users/drmyo/AppData/Local/R/win-library/4.3
[2] C:/Program Files/R/R-4.3.0/library